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- # Copyright 1999-2017 Gentoo Foundation
- # Distributed under the terms of the GNU General Public License v2
- EAPI=6
- inherit flag-o-matic toolchain-funcs
- DESCRIPTION="A rapid whole genome aligner"
- HOMEPAGE="http://mummer.sourceforge.net/"
- SRC_URI="mirror://sourceforge/mummer/MUMmer${PV}.tar.gz"
- LICENSE="Artistic"
- SLOT="0"
- KEYWORDS="~amd64 ~x86"
- IUSE="doc"
- DEPEND=""
- RDEPEND="
- app-shells/tcsh
- dev-lang/perl"
- S=${WORKDIR}/MUMmer${PV}
- PATCHES=(
- "${FILESDIR}"/${PN}-3.23-fix-build-system.patch
- "${FILESDIR}"/${PN}-3.23-fix-c++-qa.patch
- "${FILESDIR}"/${PN}-3.23-fix-shebangs.patch
- )
- src_configure() {
- use amd64 && append-cppflags -DSIXTYFOURBITS
- tc-export AR CC CXX
- }
- src_install() {
- dobin src/kurtz/mm3src/mummer
- dobin src/tigr/{combineMUMs,delta-filter,gaps,mgaps,postnuc,postpro,prenuc,prepro,repeat-match,show-aligns,show-coords,show-tiling,show-snps,show-diff}
- dobin scripts/{exact-tandems,mapview,mummerplot,dnadiff,nucmer,promer,run-mummer1,run-mummer3,nucmer2xfig}
- newbin src/tigr/annotate mummer-annotate
- insinto /usr/share/${PN}/lib
- doins scripts/Foundation.pm
- einstalldocs
- use doc && dodoc -r docs/.
- }
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