StFemtoToAnalysisTreeConverter/batch/start_qnanalysis.sh

#!/bin/bash

#
#$ -wd /scratch2/$USER/TMP
#$ -cwd
#$ -N run_QnAnalysis
#$ -q all.q
#$ -l h_rt=0:45:00
#$ -l s_rt=0:45:00
#$ -t 1-100
#
#$ -o /scratch2/$USER/TMP
#$ -e /scratch2/$USER/TMP
#

export ecm=7.7
export sys=AuAu
export model=UrQMD
export datatype=reco #mc or reco
export correction=twist # plain, recentered, twist, rescaled

#export correction_in_file=/scratch2/parfenov/Soft/SoftQnTest/testQn/MpdAnalysisTreeConverter/OUT_QNANALYSIS/UrQMD_AuAu_7.7gev_reco_correction_ga/3766895/correction_in.root
export correction_in_file=/scratch2/parfenov/Soft/SoftQnTest/testQn/MpdAnalysisTreeConverter/OUT_QNANALYSIS/UrQMD_AuAu_7.7gev_reco_correction_ba/3767201/correction_in.root

source /scratch2/parfenov/Soft/SoftQnTest/testQn/MpdAnalysisTreeConverter/external_soft_installation_scripts/SetEnv_cxx17.sh

export tree_name=aTree
export n_events=10000
#export config_file=$QNANALYSIS_DIR/setups/mpd/mpd-analysis-config.yml
export config_file=$QNANALYSIS_DIR/setups/mpd/mpd-analysis-config-bad-acc.yml
export config_name=test_$datatype
export cuts_macro=$QNANALYSIS_DIR/setups/mpd/CutsMC.C
export cuts_setup=mpd/auau/7gev/mc
export correlate_config_file=$QNANALYSIS_DIR/setups/mpd/mpd-correlation-${correction}.yml
export correlate_config_name=_tasks_$datatype
export correlate_tree_name=tree

export START_POSITION=$PWD
export MAIN_DIR=/scratch2/parfenov/Soft/SoftQnTest/testQn/MpdAnalysisTreeConverter
export INPUT_FILELISTS=$MAIN_DIR/batch/at_filelists.list
export INPUT_FILELIST=`sed "${SGE_TASK_ID}q;d" $INPUT_FILELISTS`
export COMMIT=${model}_${sys}_${ecm}gev_${datatype}_badacc_${correction}
export JOBID=${JOB_ID}

export OUT=$MAIN_DIR/OUT_QNANALYSIS/$COMMIT/$JOBID
export OUT_LOG=$OUT/log
export OUT_CORRECT=$OUT/correct
export OUT_CORRELATE=$OUT/correlate
export QA_FILE=$OUT/qa
export LOG=${OUT_LOG}/JOB_${JOB_ID}_${SGE_TASK_ID}.log
export OUTPUT_CORRECT=${OUT_CORRECT}/correction_out_${datatype}_${JOB_ID}_${SGE_TASK_ID}.root
export OUTPUT_CORRELATE=${OUT_CORRELATE}/correlation_out_${datatype}_${JOB_ID}_${SGE_TASK_ID}.root
export QA_FILE=${QA_FILE}/qa_${datatype}_${JOB_ID}_${SGE_TASK_ID}.root
export TMPALL=$MAIN_DIR/TMP
export TMPDIR=$TMPALL/TMP_${JOB_ID}_${SGE_TASK_ID}

mkdir -p $TMPDIR
mkdir -p $OUT
mkdir -p $OUT_LOG
mkdir -p $OUT_CORRECT
mkdir -p $OUT_CORRELATE
mkdir -p $QA_FILE

export BIN_CORRECT=$QNANALYSIS_DIR/build/src/QnAnalysisCorrect/QnAnalysisCorrect
export BIN_CORRELATE=$QNANALYSIS_DIR/build/src/QnAnalysisCorrelate/QnAnalysisCorrelate

export correlate_tree_name=tree

echo "Node host name: $HOSTNAME" &>> $LOG
echo "Node architecture name: $ARC" &>> $LOG

echo "Binary file: $BIN_CORRECT" &>> $LOG
echo "QnAnalysisCorrect options:" &>> $LOG
echo "    -i                   $INPUT_FILELIST" &>> $LOG
echo "    -t                   $tree_name" &>> $LOG
echo "    -n                   $n_events" &>> $LOG
echo "    --yaml-config-file   $config_file" &>> $LOG
echo "    --yaml-config-name   $config_name" &>> $LOG
echo "    --cuts-macro         $cuts_macro" &>> $LOG
echo "    --event-cuts         $cuts_setup" &>> $LOG
echo "    --qa-file            $QA_FILE" &>> $LOG
echo "Output file will be stored here: $OUTPUT_CORRECT" &>> $LOG
echo "" &>>$LOG
echo "Binary file: $BIN_CORRELATE" &>> $LOG
echo "QnAnalysisCorrelate options:" &>> $LOG
echo "    --input-file         $OUTPUT_CORRECT" &>> $LOG
echo "    --input-tree         $correlate_tree_name" &>> $LOG
echo "    --configuration-file $correlate_config_file" &>> $LOG
echo "    --configuration-name $correlate_config_name" &>> $LOG
echo "    --output-file        $OUTPUT_CORRELATE" &>> $LOG
echo "" &>>$LOG

cd $TMPDIR
if [ -f "$correction_in_file" ]; then
  rsync -vuzP $correction_in_file ${TMPDIR}/correction_in.root &>> $LOG
fi
$BIN_CORRECT -i $INPUT_FILELIST -t $tree_name -n $n_events --yaml-config-file $config_file --yaml-config-name $config_name --cuts-macro $cuts_macro --event-cuts $cuts_setup --qa-file $QA_FILE &>> $LOG

mv -v ./correction_out.root $OUTPUT_CORRECT &>> $LOG

$BIN_CORRELATE --input-file $OUTPUT_CORRECT --input-tree $correlate_tree_name --configuration-file $correlate_config_file --configuration-name $correlate_config_name --output-file $OUTPUT_CORRELATE &>> $LOG

cd $START_POSITION
rm -rfv $TMPDIR &>> $LOG
echo "Job is done!" &>> $LOG