SimData/setup.sh

#!/bin/bash

### Options for SimData configuration

if [ -d /scratch1 ] || [ -d /scratch2 ] || [ -d /nica ]
then
  export JOB_MANAGER=SGE
fi
if [ -d /lustre ]
then
  export JOB_MANAGER=SLURM
fi
if [ -d /mnt/pool/nica/5 ]
then
  export JOB_MANAGER=SLURM_MEPHI
fi
if [ -d /zfs/hybrilit.jinr.ru ] || [ -d /eos/hybrilit.jinr.ru ]
then
  export JOB_MANAGER=SLURM_GOVORUN
fi 

filename=${BASH_SOURCE}
pathname=`readlink -f $filename`
export SimDataPath=`dirname $pathname`

#####################################

if [ $JOB_MANAGER == 'SGE' ]
then
  export ROOT_SOURCE_PATH= #/opt/fairsoft/bmn/may18p1/bin/thisroot.sh
  export MCINI_PATH=/scratch2/parfenov/Soft/mcini-new
  export DCM_MODEL_PATH=/scratch2/parfenov/Soft/dcmqgsmfragments
  export JAM_MODEL_PATH=/scratch2/parfenov/Soft/jam-1.90596
  export SMASH_MODEL_PATH=/scratch2/parfenov/Soft/smash-2.1.1/build/
  export URQMD_MODEL_PATH=/scratch2/parfenov/Soft/urqmd-3.4
elif [ $JOB_MANAGER == 'SLURM' ]
then
  export ROOT_SOURCE_PATH=/cvmfs/fairsoft.gsi.de/debian10/fairsoft/jun19p2/bin/thisroot.sh
  export MCINI_PATH=/lustre/nyx/hades/user/parfenov/Soft/mcini
  export DCM_MODEL_PATH=/lustre/nyx/hades/user/parfenov/mc/macros/submit_botvina/dcmqgsmfragments
  export JAM_MODEL_PATH=/lustre/nyx/hades/user/parfenov/Soft/jam-1.90596
  export SMASH_MODEL_PATH=/lustre/nyx/hades/user/parfenov/Soft/Models/SMASH/smash-2.0.1/build
  export URQMD_MODEL_PATH=/lustre/nyx/hades/user/parfenov/Soft/urqmd-3.4
elif [ $JOB_MANAGER == 'SLURM_MEPHI' ]
then
  export ROOT_SOURCE_PATH=/mnt/pool/nica/5/parfenovpeter/Soft/Cherenkov/ROOT/build-cxx11/bin/thisroot.sh
  export MCINI_PATH=/mnt/pool/nica/5/parfenovpeter/Soft/Cherenkov/mcini
  export DCM_MODEL_PATH=/mnt/pool/nica/5/parfenovpeter/Soft/Cherenkov/dcmqgsmfragments
  export JAM_MODEL_PATH=/mnt/pool/nica/5/parfenovpeter/Soft/Cherenkov/jam-1.90596
  export SMASH_MODEL_PATH=/mnt/pool/nica/5/parfenovpeter/Soft/Cherenkov/smash-2.0.2/build
  export URQMD_MODEL_PATH=/mnt/pool/nica/5/parfenovpeter/Soft/Cherenkov/urqmd-3.4
elif [ $JOB_MANAGER == 'SLURM_GOVORUN' ]
then
  export ROOT_SOURCE_PATH= #/lustre/stor1/parfenov/Soft/ROOT/build-cxx11/bin/thisroot.sh
  export MCINI_PATH=/lustre/stor1/parfenov/Soft/mcini
  export DCM_MODEL_PATH=/lustre/stor1/parfenov/Soft/dcmqgsmfragments
  export JAM_MODEL_PATH=/lustre/stor1/parfenov/Soft/jam-1.90596
  export SMASH_MODEL_PATH=/zfs/hybrilit.jinr.ru/user/p/parfenov/Soft/smash-1.8.1/build
  export URQMD_MODEL_PATH=/lustre/stor1/parfenov/Soft/urqmd-3.4
fi

#####################################

echo "Job manager = ${JOB_MANAGER}"
echo "SimDataPath = ${SimDataPath}"

#rsync -vzruP ${SimDataPath}/templates/* ${SimDataPath}/

if [[ $JOB_MANAGER == SGE ]]
then
  JOBID='$JOB_ID'
  TASKID='$SGE_TASK_ID'
fi
if [[ $JOB_MANAGER == SLURM ]]
then
  JOBID='$SLURM_ARRAY_JOB_ID'
  TASKID='$SLURM_ARRAY_TASK_ID'
fi
if [[ $JOB_MANAGER == SLURM_MEPHI ]]
then
  JOBID='$SLURM_ARRAY_JOB_ID'
  TASKID='$SLURM_ARRAY_TASK_ID'
fi

if [[ $JOB_MANAGER == SLURM_GOVORUN ]]
then
  JOBID='$SLURM_ARRAY_JOB_ID'
  TASKID='$SLURM_ARRAY_TASK_ID'
fi


### DCM-QGSM-SMM
MODEL_NAME=DCM-QGSM-SMM
echo "Configuring ${MODEL_NAME}"

mkdir -p ${SimDataPath}/${MODEL_NAME}/scripts
mkdir -p ${SimDataPath}/${MODEL_NAME}/inputfile
mkdir -p ${SimDataPath}/${MODEL_NAME}/TMP
mkdir -p ${SimDataPath}/${MODEL_NAME}/OUT
sed\
  -e 's!_JOB_ID_!'$JOBID'!g'\
  -e 's!_TASK_ID_!'$TASKID'!g'\
  -e 's!_SIMDATA_PATH_!'$SimDataPath'!g'\
  -e 's!_ROOT_SOURCE_PATH_!source '$ROOT_SOURCE_PATH'!g'\
  -e 's!_MCINI_PATH_!'$MCINI_PATH'!g'\
  -e 's!_DCM_MODEL_PATH_!'$DCM_MODEL_PATH'!g'\
  $SimDataPath/templates/${MODEL_NAME}/scripts/start.sh.template > $SimDataPath/${MODEL_NAME}/scripts/start.sh

if [[ $JOB_MANAGER == SGE ]]
then
  sed -i "/export JOB_ID=$JOBID/i #\n#$ -wd ${SimDataPath}/${MODEL_NAME}/TMP\n#$ -cwd\n#$ -N run_sim_${MODEL_NAME}\n#$ -q all.q\n#$ -l h_rt=8:00:00\n#$ -l s_rt=8:00:00\n#$ -t 1-100\n#\n#$ -o ${SimDataPath}/${MODEL_NAME}/TMP\n#$ -e ${SimDataPath}/${MODEL_NAME}/TMP\n#\nsource /cvmfs/nica.jinr.ru/sw/os/login.sh\nmodule add CMake ROOT\n" $SimDataPath/${MODEL_NAME}/scripts/start.sh
fi
if [[ $JOB_MANAGER == SLURM ]]
then
  sed -i "/export JOB_ID=$JOBID/i #\n#SBATCH -D ${SimDataPath}/${MODEL_NAME}/TMP\n#SBATCH -J run_sim_${MODEL_NAME}\n#SBATCH -p main\n#SBATCH --time=05:00:00\n#SBATCH -a 1-100\n#\n#SBATCH -o ${SimDataPath}/${MODEL_NAME}/TMP/slurm_%A_%a.out\n#SBATCH -e ${SimDataPath}/${MODEL_NAME}/TMP/slurm_%A_%a.err\n#\n" $SimDataPath/${MODEL_NAME}/scripts/start.sh
fi
if [[ $JOB_MANAGER == SLURM_MEPHI ]]
then
  sed -i "/export JOB_ID=$JOBID/i #\n#SBATCH -D ${SimDataPath}/${MODEL_NAME}/TMP\n#SBATCH -J run_sim_${MODEL_NAME}\n#SBATCH -p compute\n#SBATCH --time=05:00:00\n#SBATCH -a 1-100\n#\n#SBATCH -o ${SimDataPath}/${MODEL_NAME}/TMP/slurm_%A_%a.out\n#SBATCH -e ${SimDataPath}/${MODEL_NAME}/TMP/slurm_%A_%a.err\n#\n" $SimDataPath/${MODEL_NAME}/scripts/start.sh
fi
if [[ $JOB_MANAGER == SLURM_GOVORUN ]]
then
  sed -i "/export JOB_ID=$JOBID/i #\n#SBATCH -D ${SimDataPath}/${MODEL_NAME}/TMP\n#SBATCH -J run_sim_${MODEL_NAME}\n#SBATCH -p mephi\n#SBATCH --time=05:00:00\n#SBATCH -a 1-100\n#\n#SBATCH -o ${SimDataPath}/${MODEL_NAME}/TMP/slurm_%A_%a.out\n#SBATCH -e ${SimDataPath}/${MODEL_NAME}/TMP/slurm_%A_%a.err\n#\nmodule add FairRoot/v18.2.0_gcc485\n" $SimDataPath/${MODEL_NAME}/scripts/start.sh
fi

rsync -vuzP ${SimDataPath}/templates/${MODEL_NAME}/inputfile/* ${SimDataPath}/${MODEL_NAME}/inputfile/
chmod +x ${SimDataPath}/${MODEL_NAME}/scripts/start.sh



### JAM
MODEL_NAME=JAM
echo "Configuring ${MODEL_NAME}"

mkdir -p ${SimDataPath}/${MODEL_NAME}/scripts
mkdir -p ${SimDataPath}/${MODEL_NAME}/inputfile
mkdir -p ${SimDataPath}/${MODEL_NAME}/TMP
mkdir -p ${SimDataPath}/${MODEL_NAME}/OUT
sed\
  -e 's!_JOB_ID_!'$JOBID'!g'\
  -e 's!_TASK_ID_!'$TASKID'!g'\
  -e 's!_SIMDATA_PATH_!'$SimDataPath'!g'\
  -e 's!_ROOT_SOURCE_PATH_!source '$ROOT_SOURCE_PATH'!g'\
  -e 's!_MCINI_PATH_!'$MCINI_PATH'!g'\
  -e 's!_JAM_MODEL_PATH_!'$JAM_MODEL_PATH'!g'\
  $SimDataPath/templates/${MODEL_NAME}/scripts/start.sh.template > $SimDataPath/${MODEL_NAME}/scripts/start.sh

if [[ $JOB_MANAGER == SGE ]]
then
  sed -i "/export JOB_ID=$JOBID/i #\n#$ -wd ${SimDataPath}/${MODEL_NAME}/TMP\n#$ -cwd\n#$ -N run_sim_${MODEL_NAME}\n#$ -q all.q\n#$ -l h=!(ncx182.jinr.ru|ncx211.jinr.ru)\n#$ -l h_rt=8:00:00\n#$ -l s_rt=8:00:00\n#$ -t 1-100\n#\n#$ -o ${SimDataPath}/${MODEL_NAME}/TMP\n#$ -e ${SimDataPath}/${MODEL_NAME}/TMP\n#\nsource /cvmfs/nica.jinr.ru/sw/os/login.sh\nmodule add ROOT/v6-24-06-3\n" $SimDataPath/${MODEL_NAME}/scripts/start.sh
fi
if [[ $JOB_MANAGER == SLURM ]]
then
  sed -i "/export JOB_ID=$JOBID/i #\n#SBATCH -D ${SimDataPath}/${MODEL_NAME}/TMP\n#SBATCH -J run_sim_${MODEL_NAME}\n#SBATCH -p main\n#SBATCH --time=05:00:00\n#SBATCH -a 1-100\n#\n#SBATCH -o ${SimDataPath}/${MODEL_NAME}/TMP/slurm_%A_%a.out\n#SBATCH -e ${SimDataPath}/${MODEL_NAME}/TMP/slurm_%A_%a.err\n#\n" $SimDataPath/${MODEL_NAME}/scripts/start.sh
fi
if [[ $JOB_MANAGER == SLURM_MEPHI ]]
then
  #sed -i "/export JOB_ID=$JOBID/i #\n#SBATCH -D ${SimDataPath}/${MODEL_NAME}/TMP\n#SBATCH -J run_sim_${MODEL_NAME}\n#SBATCH -p compute\n#SBATCH --time=05:00:00\n#SBATCH -a 1-100\n#\n#SBATCH -o ${SimDataPath}/${MODEL_NAME}/TMP/slurm_%A_%a.out\n#SBATCH -e ${SimDataPath}/${MODEL_NAME}/TMP/slurm_%A_%a.err\n#\n" $SimDataPath/${MODEL_NAME}/scripts/start.sh
  sed -i "/export JOB_ID=$JOBID/i #\n#SBATCH -D ${SimDataPath}/${MODEL_NAME}/TMP\n#SBATCH -J run_sim_${MODEL_NAME}\n#SBATCH -p compute\n#SBATCH --time=05:00:00\n#SBATCH -a 1-100\n#\n#SBATCH -o ${SimDataPath}/${MODEL_NAME}/TMP/slurm_%A_%a.out\n#SBATCH -e ${SimDataPath}/${MODEL_NAME}/TMP/slurm_%A_%a.err\n#\n" $SimDataPath/${MODEL_NAME}/scripts/start.sh
fi
if [[ $JOB_MANAGER == SLURM_GOVORUN ]]
then
  sed -i "/export JOB_ID=$JOBID/i #\n#SBATCH -D ${SimDataPath}/${MODEL_NAME}/TMP\n#SBATCH -J run_sim_${MODEL_NAME}\n#SBATCH -p mephi\n#SBATCH --time=05:00:00\n#SBATCH -a 1-100\n#\n#SBATCH -o ${SimDataPath}/${MODEL_NAME}/TMP/slurm_%A_%a.out\n#SBATCH -e ${SimDataPath}/${MODEL_NAME}/TMP/slurm_%A_%a.err\n#\nmodule add FairRoot/v18.2.0_gcc485\n" $SimDataPath/${MODEL_NAME}/scripts/start.sh
fi

rsync -vuzP ${SimDataPath}/templates/${MODEL_NAME}/scripts/jam.cfg.template ${SimDataPath}/${MODEL_NAME}/scripts/jam.cfg.template
chmod +x ${SimDataPath}/${MODEL_NAME}/scripts/start.sh



### SMASH
MODEL_NAME=SMASH
echo "Configuring ${MODEL_NAME}"
#export ROOT_SOURCE_PATH=/opt/fairsoft/bmn/may18p1/bin/thisroot.sh
#export MCINI_PATH=/scratch2/parfenov/Soft/mcini

mkdir -p ${SimDataPath}/${MODEL_NAME}/scripts
mkdir -p ${SimDataPath}/${MODEL_NAME}/inputfile
mkdir -p ${SimDataPath}/${MODEL_NAME}/TMP
mkdir -p ${SimDataPath}/${MODEL_NAME}/OUT
sed\
  -e 's!_JOB_ID_!'$JOBID'!g'\
  -e 's!_TASK_ID_!'$TASKID'!g'\
  -e 's!_SIMDATA_PATH_!'$SimDataPath'!g'\
  -e 's!_ROOT_SOURCE_PATH_!source '$ROOT_SOURCE_PATH'!g'\
  -e 's!_MCINI_PATH_!'$MCINI_PATH'!g'\
  -e 's!_SMASH_MODEL_PATH_!'$SMASH_MODEL_PATH'!g'\
  $SimDataPath/templates/${MODEL_NAME}/scripts/start.sh.template > $SimDataPath/${MODEL_NAME}/scripts/start.sh

if [[ $JOB_MANAGER == SGE ]]
then
  sed -i "/export JOB_ID=$JOBID/i #\n#$ -wd ${SimDataPath}/${MODEL_NAME}/TMP\n#$ -cwd\n#$ -N run_sim_${MODEL_NAME}\n#$ -q all.q\n#$ -l h_rt=8:00:00\n#$ -l s_rt=8:00:00\n#$ -t 1-100\n#\n#$ -o ${SimDataPath}/${MODEL_NAME}/TMP\n#$ -e ${SimDataPath}/${MODEL_NAME}/TMP\n#\n" $SimDataPath/${MODEL_NAME}/scripts/start.sh
fi
if [[ $JOB_MANAGER == SLURM ]]
then
  sed -i "/export JOB_ID=$JOBID/i #\n#SBATCH -D ${SimDataPath}/${MODEL_NAME}/TMP\n#SBATCH -J run_sim_${MODEL_NAME}\n#SBATCH -p main\n#SBATCH --time=05:00:00\n#SBATCH -a 1-100\n#\n#SBATCH -o ${SimDataPath}/${MODEL_NAME}/TMP/slurm_%A_%a.out\n#SBATCH -e ${SimDataPath}/${MODEL_NAME}/TMP/slurm_%A_%a.err\n#\n" $SimDataPath/${MODEL_NAME}/scripts/start.sh
fi
if [[ $JOB_MANAGER == SLURM_MEPHI ]]
then
  sed -i "/export JOB_ID=$JOBID/i #\n#SBATCH -D ${SimDataPath}/${MODEL_NAME}/TMP\n#SBATCH -J run_sim_${MODEL_NAME}\n#SBATCH -p compute\n#SBATCH --time=05:00:00\n#SBATCH -a 1-100\n#\n#SBATCH -o ${SimDataPath}/${MODEL_NAME}/TMP/slurm_%A_%a.out\n#SBATCH -e ${SimDataPath}/${MODEL_NAME}/TMP/slurm_%A_%a.err\n#\n" $SimDataPath/${MODEL_NAME}/scripts/start.sh
fi
if [[ $JOB_MANAGER == SLURM_GOVORUN ]]
then
  sed -i "/export JOB_ID=$JOBID/i #\n#SBATCH -D ${SimDataPath}/${MODEL_NAME}/TMP\n#SBATCH -J run_sim_${MODEL_NAME}\n#SBATCH -p mephi\n#SBATCH --time=05:00:00\n#SBATCH -a 1-100\n#\n#SBATCH -o ${SimDataPath}/${MODEL_NAME}/TMP/slurm_%A_%a.out\n#SBATCH -e ${SimDataPath}/${MODEL_NAME}/TMP/slurm_%A_%a.err\n#\nmodule add FairRoot/v18.2.0_gcc485\n" $SimDataPath/${MODEL_NAME}/scripts/start.sh
fi

rsync -vuzP ${SimDataPath}/templates/${MODEL_NAME}/inputfile/config.yaml ${SimDataPath}/${MODEL_NAME}/inputfile/config.yaml
chmod +x ${SimDataPath}/${MODEL_NAME}/scripts/start.sh



### UrQMD
MODEL_NAME=UrQMD
echo "Configuring ${MODEL_NAME}"

mkdir -p ${SimDataPath}/${MODEL_NAME}/scripts
mkdir -p ${SimDataPath}/${MODEL_NAME}/inputfile
mkdir -p ${SimDataPath}/${MODEL_NAME}/TMP
mkdir -p ${SimDataPath}/${MODEL_NAME}/OUT
sed\
  -e 's!_JOB_ID_!'$JOBID'!g'\
  -e 's!_TASK_ID_!'$TASKID'!g'\
  -e 's!_SIMDATA_PATH_!'$SimDataPath'!g'\
  -e 's!_ROOT_SOURCE_PATH_!source '$ROOT_SOURCE_PATH'!g'\
  -e 's!_MCINI_PATH_!'$MCINI_PATH'!g'\
  -e 's!_URQMD_MODEL_PATH_!'$URQMD_MODEL_PATH'!g'\
  $SimDataPath/templates/${MODEL_NAME}/scripts/start.sh.template > $SimDataPath/${MODEL_NAME}/scripts/start.sh

if [[ $JOB_MANAGER == SGE ]]
then
  sed -i "/export JOB_ID=$JOBID/i #\n#$ -wd ${SimDataPath}/${MODEL_NAME}/TMP\n#$ -cwd\n#$ -N run_sim_${MODEL_NAME}\n#$ -q all.q\n#$ -l h_rt=8:00:00\n#$ -l s_rt=8:00:00\n#$ -t 1-100\n#\n#$ -o ${SimDataPath}/${MODEL_NAME}/TMP\n#$ -e ${SimDataPath}/${MODEL_NAME}/TMP\n#\n" $SimDataPath/${MODEL_NAME}/scripts/start.sh
fi
if [[ $JOB_MANAGER == SLURM ]]
then
  sed -i "/export JOB_ID=$JOBID/i #\n#SBATCH -D ${SimDataPath}/${MODEL_NAME}/TMP\n#SBATCH -J run_sim_${MODEL_NAME}\n#SBATCH -p main\n#SBATCH --time=05:00:00\n#SBATCH -a 1-100\n#\n#SBATCH -o ${SimDataPath}/${MODEL_NAME}/TMP/slurm_%A_%a.out\n#SBATCH -e ${SimDataPath}/${MODEL_NAME}/TMP/slurm_%A_%a.err\n#\n" $SimDataPath/${MODEL_NAME}/scripts/start.sh
fi
if [[ $JOB_MANAGER == SLURM_MEPHI ]]
then
  sed -i "/export JOB_ID=$JOBID/i #\n#SBATCH -D ${SimDataPath}/${MODEL_NAME}/TMP\n#SBATCH -J run_sim_${MODEL_NAME}\n#SBATCH -p compute\n#SBATCH --time=05:00:00\n#SBATCH -a 1-100\n#\n#SBATCH -o ${SimDataPath}/${MODEL_NAME}/TMP/slurm_%A_%a.out\n#SBATCH -e ${SimDataPath}/${MODEL_NAME}/TMP/slurm_%A_%a.err\n#\n" $SimDataPath/${MODEL_NAME}/scripts/start.sh
fi
if [[ $JOB_MANAGER == SLURM_GOVORUN ]]
then
  sed -i "/export JOB_ID=$JOBID/i #\n#SBATCH -D ${SimDataPath}/${MODEL_NAME}/TMP\n#SBATCH -J run_sim_${MODEL_NAME}\n#SBATCH -p mephi\n#SBATCH --time=05:00:00\n#SBATCH -a 1-100\n#\n#SBATCH -o ${SimDataPath}/${MODEL_NAME}/TMP/slurm_%A_%a.out\n#SBATCH -e ${SimDataPath}/${MODEL_NAME}/TMP/slurm_%A_%a.err\n#\nmodule add FairRoot/v18.2.0_gcc485\n" $SimDataPath/${MODEL_NAME}/scripts/start.sh
fi

rsync -vuzP ${SimDataPath}/templates/${MODEL_NAME}/scripts/inputfile.template ${SimDataPath}/${MODEL_NAME}/scripts/inputfile.template
chmod +x ${SimDataPath}/${MODEL_NAME}/scripts/start.sh